Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs56034367 chr19:33453654 T/C 1.4E-9 175 15.55 13.58 2.2 KM Plot
PAAD rs56075983 chr7:20647794 T/C 1.81E-6 178 15.53 15.57 3.67 KM Plot
PAAD rs56082732 chr7:154695984 G/C 3.0E-15 178 16.03 12.6 2.82 KM Plot
PAAD rs56138907 chr17:19989045 G/C 5.01E-13 177 15.4 17.17 0.83 KM Plot
PAAD rs56148129 chr7:6179298 G/A 0 175 15.47 15.5 1.03 KM Plot
PAAD rs56177128 chr19:49353418 A/G 1.44E-12 173 16.2 12.6 1.37 KM Plot
PAAD rs56197464 chr7:6181266 T/C 0 175 15.37 15.67 1.03 KM Plot
PAAD rs56208341 chr15:81674541 C/T 0 171 15.33 16.48 1.78 KM Plot
PAAD rs56254351 chr17:27169526 G/A 1.88E-5 172 15.48 16.03 3.67 KM Plot
PAAD rs56262033 chr12:106032923 G/A 4.49E-6 173 15.37 16.37 5.03 KM Plot
PAAD rs56262708 chr3:64082280 C/T 0 171 15.33 16.57 0.2 KM Plot
PAAD rs56270961 chr7:6195570 T/G 0 170 15.53 14.88 1.03 KM Plot
PAAD rs56274015 chr17:12895655 C/T 3.52E-6 176 16.07 15.47 7.77 KM Plot
PAAD rs56365287 chr19:41554399 G/A 4.49E-5 170 16.6 14.6 8.23 KM Plot
PAAD rs56379743 chr17:54292613 T/G 3.21E-5 175 15.95 12.13 3.9 KM Plot